多人协作检查MRI数据质量前奏曲

按步骤，仅作记录，比较乱，以下代码为linux环境运行。

第一步：创建文件夹准备存放对应模态数据

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import shutil
import re

def extract_file(path_name):
    # make new directory
    # directory_name = ['t1','t2','rest','dti','tof','aaheadscouts']
    directory_name = ['t1','rest','dti']
    for name in directory_name:
        try:
            os.makedirs(path_name + '/' + name)
            # os.rmdir(path_name + '/' + name)
        except:
            continue
    # get current files
    # directory = os.listdir(path_name)
    # for i in directory:
    #     dir_files = os.listdir(i)
        

#old_dir_name = 'XXX/XXX'
dir_name = '/XXX/done'
new_name = '/XXX/second'

for i in os.listdir(dir_name):
        # 这里创建文件夹只能循环一次
        #os.makedirs(dir_name + r'//' + i)
        new_dir_name = os.path.join(new_name + '/' + i)
        #os.makedirs(new_dir_name)
        extract_file(new_dir_name)
# extract_file('C://AA/...')

---

第二步：把T1、DTI、REST分别拷贝到对应文件夹

# -*- coding: utf-8 -*-
# encoding:utf-8
import os
import re
import string
import shutil

dir_name = '/xxx/done'
target_dir = '/xxx/second'
for i in os.listdir(dir_name):
    cur_path = os.path.join(dir_name + '/' + i)
    if os.path.isdir(cur_path):
        # print(cur_path)
        for j in os.listdir(cur_path):
            cur_son_path = os.path.join(cur_path + '/' + j)
            # print(type(j))
            # print(cur_son_oath)

            # 判断是哪个模态
            if 'co' in j:
                # shutil.copy(cur_son_path,target_dir + '/' + i + '/'+ 't1')
                t1_name = j[2:-4]
                # print(j)
                # print(t1_name)
                for k in os.listdir(cur_path):
                    if t1_name in k:
            cur_son_son_path = os.path.join(cur_path + '/' + k)
            print "Now it is copying "+ k + " t1 files"
                        shutil.move(cur_son_son_path,target_dir + '/' + i + '/'+ 't1')
            if 'bvec' in j:
                dti_name = j[:-5]
                # print(dti_name)
                for l in os.listdir(cur_path):
                    if dti_name in l:
            cur_son_son_path = os.path.join(cur_path + '/' + l)
            print "Now it is copying "+ l + " dti files"
                        shutil.move(cur_son_son_path,target_dir + '/' + i + '/'+ 'dti')

---

第三步：为协作人员创建文件夹准备拷贝对应模态文件，比如这里协作人员需要的是DTI模态

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import shutil
import re

def extract_file(path_name):
    # make new directory
    # directory_name = ['t1','t2','rest','dti','tof','aaheadscouts']
    directory_name = ['dti']
    for name in directory_name:
        try:
            os.makedirs(path_name + '/' + name)
            # os.rmdir(path_name + '/' + name)
        except:
            continue
    # get current files
    # directory = os.listdir(path_name)
    # for i in directory:
    #     dir_files = os.listdir(i)
        


dir_name = '/XXX/done'
new_name = '/XXX/xxx'

for i in os.listdir(dir_name):
        # 这里只能循环一次
        #os.makedirs(dir_name + r'//' + i)
        new_dir_name = os.path.join(new_name + '/' + i)
        #os.makedirs(new_dir_name)
        extract_file(new_dir_name)
# extract_file('C://AA/...')

---

第四步：把对应模态文件拷贝给协作人员

# -*- coding: utf-8 -*-
# encoding:utf-8
import os
import re
import shutil

dir_name = '/brain/xxx'
target_dir = '/brain/Tom/xxx'
for i in os.listdir(dir_name):
    cur_path = os.path.join(dir_name + '/' + i)
    if os.path.isdir(cur_path):
        # print(cur_path)
        for j in os.listdir(cur_path):
        if j == 'dti':
        cur_son_path = os.path.join(cur_path + '/' + j)
        for k in os.listdir(cur_son_path):
            #k = str(k)
            # print(type(j))
            # print(cur_son_oath)
            print "Now it is copying "+ k + " dti files"
            shutil.copy(cur_son_path + '/' + k,target_dir + '/' + i + '/'+ 'dti')

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