hisat2报错Error: Encountered inter
2021-04-12 本文已影响0人
jiarf
hisat2 --new-summary -p 10 --rna-strandness R
-x /data/Genome/hisat2_index/Macaca_mulatta_index
-1 aESCs-1_fastp_1.fq.gz -2 aESCs-1_fastp_2.fq.gz
-S hisat2/sam/aESCs-1.sam 1>./hisat2/log/aESCs-1_hisat2.log 2>&1
这里会报错：Error: Encountered internal HISAT2 exception (#1)和(ERR): hisat2-align exited with value 1是因为index有问题，这里不应该只放目录还应该有/data/Genome/hisat2_index/Macaca_mulatta_index/Macaca_mulatta,这个index才是对的，
