使用bioconda安装常用软件

批量下载安装：

vim mamba.sh 
i 插入下方命令
Esc Shift+： wq
sh mamba.sh

小工具：比对、cricos图、下载工具：

mamba install -y lastz 
mamba install -y sratools 
mamba install -y seqkit 
mamba install -y seqtk 
mamba install -y bedtools 
mamba install -y bedops 
mamba install -y gfatools 
mamba install -y circos 
mamba install -y entrez-direct 
mamba install -y emboss
mamba install -y bwa 
mamba install -y samtools 
mamba install -y bcftools 
mamba install -y blast 
mamba install -y blat 
mamba install -y mummer 
mamba install -y mafft 
mamba install -y muscle 

基因功能分析预测

mamba install -y spades 
mamba install -y quast 
mamba install -y racon 
mamba install -y miniasm 
mamba install -y nanopolish
mamba install -y augustus
mamba install -y trf
mamba install -y prodigal 
mamba install -y glimmer 

基因组拼接

mamba install -y velvet 
mamba install -y flye 
mamba install -y miniasm 
mamba install -y canu 
mamba install -y megahit 

测序数据质控

mamba install -y fastp 
mamba create -n nanoplot -y nanoplot
mamba install -y fastqc multiqc 
mamba install -y trimmomatic