2022-01-17 单细胞数据库
2022-01-17 本文已影响0人
徐添添
1GEO
![](https://img.haomeiwen.com/i25071788/c22d148fd8b0cb28.png)
![](https://img.haomeiwen.com/i25071788/d3d9c6df6ef4e952.png)
![](https://img.haomeiwen.com/i25071788/e0d34311241d259a.png)
直接发邮件要数据
![](https://img.haomeiwen.com/i25071788/2aef738f396972af.png)
10×数据提取3个文件或者一个表达矩阵
![](https://img.haomeiwen.com/i25071788/924f8f446f394224.png)
![](https://img.haomeiwen.com/i25071788/6f06b9093b0a80de.png)
2EBI
![](https://img.haomeiwen.com/i25071788/ead9b0b09da96e58.png)
![](https://img.haomeiwen.com/i25071788/170012a1511c3a73.png)
![](https://img.haomeiwen.com/i25071788/4f581ff741eab07a.png)
![](https://img.haomeiwen.com/i25071788/f6b09f8c1276959b.png)
点download
![](https://img.haomeiwen.com/i25071788/3ec354a6bb238234.png)
可以参考相同研究的marker基因用来注释;
一般下载raw数据,不要标准化的数据
3胖老大宝数据库
![](https://img.haomeiwen.com/i25071788/bb6f97fbdf57045c.png)
![](https://img.haomeiwen.com/i25071788/0b91c5aebca0b839.png)
protocal筛选测序方法,点样本旁边的view,可以直接下载R.data
![](https://img.haomeiwen.com/i25071788/88cc4bfdcf3e907c.png)
基因检索功能
![](https://img.haomeiwen.com/i25071788/49f449bcc1a5f139.png)
![](https://img.haomeiwen.com/i25071788/3893c3938f74f1b0.png)
![](https://img.haomeiwen.com/i25071788/f348183e11e27e78.png)
marker基因检索功能
![](https://img.haomeiwen.com/i25071788/e3be8a1d19b5b689.png)
文献知识库
![](https://img.haomeiwen.com/i25071788/245066da84446b62.png)
胖老大宝总结
![](https://img.haomeiwen.com/i25071788/a5fb0cb5584ecbb0.png)
4HCA用来找对照样本
![](https://img.haomeiwen.com/i25071788/273774fccfdfab82.png)
5scRNASeqDB
![](https://img.haomeiwen.com/i25071788/e17c23736a046d0f.png)
![](https://img.haomeiwen.com/i25071788/7e992aeeeb3f73db.png)
检索基因在不同细胞中的表达水平
![](https://img.haomeiwen.com/i25071788/4f096f47a8a53f80.png)
检索细胞
![](https://img.haomeiwen.com/i25071788/473428233c2e939d.png)
6BIsc
![](https://img.haomeiwen.com/i25071788/2ee477c3cbe1a707.png)
7cellmarker数据库用来注释细胞
![](https://img.haomeiwen.com/i25071788/fa37f5b2e72196af.png)
![](https://img.haomeiwen.com/i25071788/02acc411884e9f62.png)
数据库总结
![](https://img.haomeiwen.com/i25071788/0aee7f69967c0b82.png)
数据检索:HCA用来找对照,scRNAseqDB可以检索细胞类型
数据分析:panglaoDB有分析最新分析方法的文献
研究基础:看别人是怎么设计课题,panglaoDB可以检索单基因,Broad institute有很多新研究的数据
细胞注释:首选cellmarker,HCL是一个比较新的marker数据库
其他
![](https://img.haomeiwen.com/i25071788/de8e276d877409f1.png)
![](https://img.haomeiwen.com/i25071788/bcec5e32a266dc83.png)