改名+压缩

2020-09-17  本文已影响0人  rong酱
for i in `ls ./raw_data/*/*.fq.gz`
do
        sample_name=`echo $i | awk -F "/" '{print $NF}' | awk -F "." '{print $1}'`
        sample=`echo $i | awk -F "/" '{print $NF}'`
        cd ${path}
        mkdir ${sample_name} 
        cd ${sample_name}
        ln -s $i ./
        zcat ${sample} | split -16000000 
        count=0
        for z in `ls x*` 
        do
                count=$((${count}+1))
                /bin/mv ${z} ${sample_name}_00${count}.fastq
        done
done

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