一起生信啦啦啦UCSC

各基因组数据库

2018-10-21  本文已影响60人  苏牧传媒

1.UCSC:

ftpftp://hgdownload.soe.ucsc.edu/goldenPath

ftp-hg19ftp://hgdownload.soe.ucsc.edu/goldenPath/hg19/

ftp-hg38ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/

webhttp://hgdownload.cse.ucsc.edu/downloads.html#human

table-browserhttps://genome.ucsc.edu/cgi-bin/hgTables

2.Ensemble:

ftp:ftp://ftp.ensembl.org/pub/

ftp-release94-GRCh38-fa:ftp://ftp.ensembl.org/pub/release-94/fasta/homo_sapiens/

ftp-release94-GRCh38-gff3:ftp://ftp.ensembl.org/pub/release-94/gff3/homo_sapiens/

ftp-release94-GRCh38-gtf:ftp://ftp.ensembl.org/pub/release-94/gtf/homo_sapiens/

web:https://www.ensembl.org/info/data/ftp/index.html

3.Gencode:

ftpftp://ftp.sanger.ac.uk/pub/gencode/

ftp-human:ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/

ftp-human-release27:ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_27/

4.NCBI:

ftp:ftp://ftp.ncbi.nlm.nih.gov/

ftp-GRCh37:ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/

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