NCBI下载SRR数据，获取Sample Name

image.png

比如获得了一下数据

image.png

如何知道每个样本的名字呢 ？
首先安装软件

 sh -c "$(curl -fsSL https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)"

接下来

$ head find.command
esearch -db sra -query SRR1945435  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945436  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945437  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945438  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945439  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945440  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945441  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945442  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945443  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
esearch -db sra -query SRR1945444  | efetch -format runinfo  | cut -d, -f1,30 >> SampleName
$ head SampleName 
Run,SampleName
SRR1945435,88
Run,SampleName
SRR1945436,108
Run,SampleName
SRR1945437,139
Run,SampleName
SRR1945438,159
Run,SampleName
SRR1945439,265