记录一下repeatmodeler报错
2023-08-01 本文已影响0人
多啦A梦的时光机_648d
/home/lx_sky6/software/RepeatModeler-2.0.3/BuildDatabase -name genome genome.fa
Reading genome.Fragariastrum_articulatum.fa...
The makeblastdb program exited with code 127. Please check your input file(s) for potential formating errors.
/home/lx_sky6/software/miniconda3/bin/makeblastdb returned: /home/lx_sky6/software/miniconda3/bin/makeblastdb: symbol lookup error: /home/lx_sky6/software/miniconda3/bin/makeblastdb: undefined symbol: _ZN4ncbi14CBuildDatabaseC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_bibPSobNS_15EBlastDbVersionEb
The command used was: /home/lx_sky6/software/miniconda3/bin/makeblastdb -blastdb_version 4 -out genome -parse_seqids -dbtype nucl -in ./RGtvKXBE_K 2>&1
Died at /home/lx_sky6/software/RepeatModeler-2.0.3/BuildDatabase line 332.
原因：RepeatModeler-2.0.3不支持rmblast-2.09一下的版本了
升级到rmblast-2.14.0
wget https://www.repeatmasker.org/rmblast/rmblast-2.14.0+-x64-linux.tar.gz
tar zxvf rmblast-2.14.0-x64-linux.tar.gz
##从新安装一下RepeatModeler-2.0.3
cd /path_to/RepeatModeler-2.0.3
perl ./configure
/home/lx_sky6/software/RepeatModeler-2.0.3/BuildDatabase -name genome genome.fa
Building database genome:
Reading genome.fa...
Number of sequences (bp) added to database: 165 ( 368886738 bp )
