RNA-seq一起生信啦啦啦分析方法

GO分析

2018-11-05  本文已影响61人  苏牧传媒

1.最常用的在线网站David:

https://david.ncifcrf.gov/home.jsp

然后用R进行可视化

good:可以自行筛选GO/KEGG进行可视化

The Fold Enrichment is defined as the ratio of the two proportions. For example, if 40/400 (i.e. 10%) of your input genes involved in "kinase activity" and the background information is 300/30000 genes (i.e.  1%) associating with "kinase activity", roughly 10% / 1% = 10 fold enrichment

2.R包:clusterprofile

good:一套全,出图相对漂亮点

3.在线网站:Metascape

http://metascape.org/gp/index.html#/main/step1

good:excel和出图

4.在线网站:webgenstal

http://www.webgestalt.org

good:出图和关系网

5.在线网站STRING:PPI

https://string-db.org/

也可以出GO结果但是不太好,适合做PPI

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