GO分析
2018-11-05 本文已影响61人
苏牧传媒
1.最常用的在线网站David:
https://david.ncifcrf.gov/home.jsp
然后用R进行可视化
good:可以自行筛选GO/KEGG进行可视化
The Fold Enrichment is defined as the ratio of the two proportions. For example, if 40/400 (i.e. 10%) of your input genes involved in "kinase activity" and the background information is 300/30000 genes (i.e. 1%) associating with "kinase activity", roughly 10% / 1% = 10 fold enrichment
2.R包:clusterprofile
good:一套全,出图相对漂亮点
3.在线网站:Metascape
http://metascape.org/gp/index.html#/main/step1
good:excel和出图
4.在线网站:webgenstal
good:出图和关系网
5.在线网站STRING:PPI
也可以出GO结果但是不太好,适合做PPI