使用KaKs_calculator计算Ka/Ks
2020-10-15 本文已影响0人
wo_monic
安装kakscalculator2
chmod 757 ./KaKs_Calculator2.0/src/AXTConvertor
chmod 757 ./KaKs_Calculator2.0/bin/Linux/KaKs_Calculator
添加环境变量
echo 'export PATH=/share/software/KaKs_Calculator2.0/bin/Linux:$PATH' >>~/.bashrc
echo 'export PATH=/share/software/KaKs_Calculator2.0/src:$PATH' >>~/.bashrc
source ~/.bashrc
安装序列比对软件mafft 下载地址
wget https://mafft.cbrc.jp/alignment/software/mafft-7.471-with-extensions-src.tgz
tar -zxvf mafft-7.471-with-extensions-src.tgz
cd mafft-7.471-with-extensions
cd core
vim Makefile
#手动修改prefix和bindir
我的是修改为下面的路径
PREFIX = /share/softwares/mafft
BINDIR = /share/softwares/mafft/bin
make clean
make
make install
echo `export PATH=/share/softwares/mafft/bin:$PATH` >>~/.bashrc
source ~/.bashrc
