R包inferCNV rjags安装

install.packages("rjags")Installing package into ‘/home/lfr/R/x86_64-pc-linux-gnu-library/4.1’

(as ‘lib’ is unspecified)trying URL 'https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/rjags_4-12.tar.gz'Content type 'application/octet-stream' length 74067 bytes (72 KB)==================================================downloaded 72 KB* installing *source* package ‘rjags’ ...** package ‘rjags’ successfully unpacked and MD5 sums checked** using staged installation

/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not found/usr/lib/R/bin/config: 1: eval: make: not foundchecking for pkg-config... no

configure: Attempting legacy configuration of rjags

checking for jags... /usr/bin/jags

checking for g++... no

checking for c++... no

checking for gpp... no

checking for aCC... no

checking for CC... no

checking for cxx... no

checking for cc++... no

checking for cl.exe... no

checking for FCC... no

checking for KCC... no

checking for RCC... no

checking for xlC_r... no

checking for xlC... no

checking whether the C++ compiler works... noconfigure: error: in `/tmp/Rtmp1lFBKi/R.INSTALL21f25565bf83/rjags':configure: error: C++ compiler cannot create executables

See `config.log' for more details

ERROR: configuration failed for package ‘rjags’* removing ‘/home/lfr/R/x86_64-pc-linux-gnu-library/4.1/rjags’

Warning in install.packages :installation of package ‘rjags’ had non-zero exit status

The downloaded source packages are in ‘/tmp/RtmpKp9WTz/downloaded_packages’

首先第一个错误应该是 make没有安装，表示系统上没有make实用程序。

为了让R安装软件包,必须在Ubuntu中安装base-r-dev软件包。 r-base-dev包含许多软件包,包括一个名为build-essential的软件包,它涵盖了gcc编译器和make。

要安装 r-base-dev,请在linux终端窗口中发出以下命令,假设您已经安装了r-base。

sudo apt-get update

sudo apt-get install r-base-dev  ##这个里面就涵盖了编译器和make....

后面直接安装java环境应该就可以了

install.packages("rjags")

library(rjags)

if (!requireNamespace("BiocManager", quietly = TRUE))

install.packages("BiocManager")

BiocManager::install("infercnv")

library(infercnv)

(本篇的内容就先到这里，水平有限，有错误的地方，欢迎大家批评指正！)