#可视化#Pymol命令大全

列举所有Pymol命令，暂未完成

A

Abort

空功能，与Python的None相似

Alias

alias允许常用的命令以单个PyMOL关键词表示
USAGE

alias name, command-sequence

PYMOL API

cmd.alias(string name,string command)

EXAMPLES

alias go,load $TUT/1hpv.pdb; zoom 200/; show sticks, 200/ around 8 go

B

Bg Color

Bg_Color是用来进行设置背景颜色
USAGE

bg_color [color]

PYMOL API

cmd.bg_color(string color="balck")

EXAMPLE

#设置为白色背景
bg_color white

D

Delete

delete移除objects或者selections匹配的expression名称
USAGE

delete name
delete all  #删除所有

name=name of object or selection
PYMOL API

cmd.delete(string name = object-or-selection-name )

R

Remove

remove将会从模型中删除选择的原子
USAGE

remove (selection)

PYMOL API

cmd.remove( string selection )

EXAMPLES

remove (resi 124)

S

Show

show和show as命令是在PyMOL中经常使用的命令工具，你可以用来展示清晰的原子作为Lines，Sticks，Cartoons或者其他类型
USAGE

show
show reprentation [,object]
show reprentation [,(selection)]
show (selection)

PYMOL API

cmd.show( string representation="", string selection="" )

EXAMPLES

#展示骨架为lines模式
show lines,(name ca or name c or name n)

#展示ribbon对于所有的objects
show ribbon

# 展示hetero原子作为spheres
show spheres,het

# 展示极性氢
hide everything, ele h
show lines,ele

Show_as

USAGE

show_as representation [,selection]

ARGUMENTS

• representation = lines,spheres,mesh,ribbon,cartoon,sticks,dots,surface,labels,extent,nonbonded,nb_spheres,slice,extent,slice,dashes,angles,dihedrals,cgo,cell,callback,everything
  -selection=string{default:all}
  PYMOL API

cmd.show_as(string representation, string selection)

EXAMPLES

# 展示骨架原子作为lines
show_as lines，name ca or name c or name n

# 展示所有的作为ribbon
show_as ribbon

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