Omics Academy

Some frequently used PBS command

2018-11-06  本文已影响0人  OmicsAcademy

==============================================================
command description
==============================================================
qstat list information about queues and jobs
qstat -q list all queues on system
qstat -Q list queue limits for all queues
qstat -a list all jobs on system
qstat -au userid list all jobs owned by user userid
qstat -s list all jobs with status comments
qstat -r list all running jobs
qstat -f jobid list all information known about specified job
qstat -Qf queue list all information known about specified queue
qstat -B List summary information about the PBS server
qsub submit a batch job to PBS
qsub jobscript submit jobscript to PBS
qsub -I submit an interactive-batch job
qsub -q queue submit job directly to specified queue
qdel <job_id> Delete the job
==============================================================
qsub -
Submits a job script. Useful options include -I for an interactive job. qsub with a filename will read the job script from a file. Without a file name it will read the job script from the command line. A job can be specified in a single command line.
==============================================================
qstat
Queries the current job queue and lists its contents. Useful options include -a which lists all jobs and -f which gives a full listing of queued jobs. With -f the listing includes information on why a job is not currently running. The meaning of the output from qstat is described on the qstat man page.
qstat -f <jobid>
Displays more information about a particular job (also see man qstat)
qstat -q
To list all the PBS queues on Discover.
qstat -Qf <Name of the Queue , e.g general>
To get details of the particular queue.
==============================================================
qdel <jobid>
This command will stop a running or queued pbs job identified by jobid. The parameter jobid is the identifier listed in qstat and returned by qsub.
pbsnodes -a
This command will list all the nodes that PBS can send jobs to and their attributes. Attributes are arbitrary keys listed in the properites field.
==============================================================

上一篇下一篇

猜你喜欢

热点阅读