pip install scanpy==1.6.0

(sc3) rstudio 13:21:48 ~
$ pip install scanpy==1.6.0
Collecting scanpy==1.6.0
  Downloading scanpy-1.6.0-py3-none-any.whl (7.7 MB)
     |████████████████████████████████| 7.7 MB 61 kB/s 
Requirement already satisfied: numpy>=1.17.0 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (1.18.1)
Collecting legacy-api-wrap
  Downloading legacy_api_wrap-1.2-py3-none-any.whl (37 kB)
Requirement already satisfied: patsy in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (0.5.1)
Collecting networkx>=2.3
  Using cached networkx-2.6.2-py3-none-any.whl (1.9 MB)
Requirement already satisfied: seaborn in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (0.11.2)
Collecting umap-learn>=0.3.10
  Using cached umap_learn-0.5.1-py3-none-any.whl
Requirement already satisfied: pandas>=0.21 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (1.3.2)
Requirement already satisfied: numba>=0.41.0 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (0.53.1)
Collecting natsort
  Using cached natsort-7.1.1-py3-none-any.whl (35 kB)
Collecting tqdm
  Using cached tqdm-4.62.2-py2.py3-none-any.whl (76 kB)
Collecting anndata>=0.7
  Using cached anndata-0.7.6-py3-none-any.whl (127 kB)
Collecting setuptools-scm
  Downloading setuptools_scm-6.0.1-py3-none-any.whl (27 kB)
Requirement already satisfied: scikit-learn>=0.21.2 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (0.24.2)
Collecting h5py>=2.10.0
  Using cached h5py-3.4.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
Requirement already satisfied: scipy>=1.4 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (1.7.1)
Collecting sinfo
  Using cached sinfo-0.3.4-py3-none-any.whl
Requirement already satisfied: statsmodels>=0.10.0rc2 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (0.12.2)
Requirement already satisfied: joblib in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (1.0.1)
Requirement already satisfied: tables in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (3.6.1)
Requirement already satisfied: matplotlib>=3.1.2 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scanpy==1.6.0) (3.4.3)
Collecting packaging
  Using cached packaging-21.0-py3-none-any.whl (40 kB)
Collecting xlrd<2.0
  Using cached xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
Collecting numpy>=1.17.0
  Downloading numpy-1.21.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.8 MB)
     |████████████████████████████████| 15.8 MB 61.2 MB/s 
Requirement already satisfied: cycler>=0.10 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from matplotlib>=3.1.2->scanpy==1.6.0) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from matplotlib>=3.1.2->scanpy==1.6.0) (1.3.1)
Requirement already satisfied: pyparsing>=2.2.1 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from matplotlib>=3.1.2->scanpy==1.6.0) (2.4.7)
Requirement already satisfied: pillow>=6.2.0 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from matplotlib>=3.1.2->scanpy==1.6.0) (8.3.1)
Requirement already satisfied: python-dateutil>=2.7 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from matplotlib>=3.1.2->scanpy==1.6.0) (2.8.2)
Requirement already satisfied: six in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from cycler>=0.10->matplotlib>=3.1.2->scanpy==1.6.0) (1.16.0)
Requirement already satisfied: setuptools in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from numba>=0.41.0->scanpy==1.6.0) (57.4.0)
Requirement already satisfied: llvmlite<0.37,>=0.36.0rc1 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from numba>=0.41.0->scanpy==1.6.0) (0.36.0)
Requirement already satisfied: pytz>=2017.3 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from pandas>=0.21->scanpy==1.6.0) (2021.1)
Requirement already satisfied: threadpoolctl>=2.0.0 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from scikit-learn>=0.21.2->scanpy==1.6.0) (2.2.0)
Collecting pynndescent>=0.5
  Using cached pynndescent-0.5.4-py3-none-any.whl
Collecting get-version>=2.0.4
  Downloading get_version-3.5-py3-none-any.whl (17 kB)
Collecting dunamai
  Downloading dunamai-1.6.0-py3-none-any.whl (16 kB)
Collecting stdlib-list
  Using cached stdlib_list-0.8.0-py3-none-any.whl (63 kB)
Requirement already satisfied: numexpr>=2.6.2 in ./miniconda3/envs/sc3/lib/python3.9/site-packages (from tables->scanpy==1.6.0) (2.7.3)
Installing collected packages: numpy, dunamai, xlrd, stdlib-list, pynndescent, packaging, natsort, h5py, get-version, umap-learn, tqdm, sinfo, setuptools-scm, networkx, legacy-api-wrap, anndata, scanpy
  Attempting uninstall: numpy
    Found existing installation: numpy 1.18.1
    Uninstalling numpy-1.18.1:
      Successfully uninstalled numpy-1.18.1
Successfully installed anndata-0.7.6 dunamai-1.6.0 get-version-3.5 h5py-3.4.0 legacy-api-wrap-1.2 natsort-7.1.1 networkx-2.6.2 numpy-1.21.2 packaging-21.0 pynndescent-0.5.4 scanpy-1.6.0 setuptools-scm-6.0.1 sinfo-0.3.4 stdlib-list-0.8.0 tqdm-4.62.2 umap-learn-0.5.1 xlrd-1.2.0
(sc3) rstudio 13:22:56 ~