linux学习100篇14:安装org.Mm.eg.db

安装org.Mm.eg.db

> BiocManager::install("org.Mm.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details

replacement repositories:
    CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/

Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installing package(s) 'org.Mm.eg.db'
trying URL 'http://mirrors.tuna.tsinghua.edu.cn/bioconductor//packages/3.13/data/annotation/src/contrib/org.Mm.eg.db_3.13.0.tar.gz'
Content type 'application/x-gzip' length 74461267 bytes (71.0 MB)
==================================================
downloaded 71.0 MB

* installing *source* package ‘org.Mm.eg.db’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (org.Mm.eg.db)

The downloaded source packages are in
    ‘/tmp/RtmpvprwOn/downloaded_packages’
Installation paths not writeable, unable to update packages
  path: /usr/lib/R/library
  packages:
    spatial
> #library(org.Hs.eg.db)#修改
> library(org.Mm.eg.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl,
    intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames,
    sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max,
    which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To
    cite Bioconductor, see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:clusterProfiler’:

    rename

The following objects are masked from ‘package:base’:

    expand.grid, I, unname


Attaching package: ‘IRanges’

The following object is masked from ‘package:clusterProfiler’:

    slice


Attaching package: ‘AnnotationDbi’

The following object is masked from ‘package:clusterProfiler’:

    select


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