UCSC xena 浏览器才是最简单的TCGA数据下载途径
全部根据癌症种类整理好了,直接点击链接即可下载。
同时也提供相应的可视化工具:https://xenabrowser.net/heatmap/
癌症种类列表如下:
GDC TCGA Acute Myeloid Leukemia (LAML)
GDC TCGA Adrenocortical Cancer (ACC)
GDC TCGA Bile Duct Cancer (CHOL)
GDC TCGA Bladder Cancer (BLCA)
GDC TCGA Cervical Cancer (CESC)
GDC TCGA Endometrioid Cancer (UCEC)
GDC TCGA Esophageal Cancer (ESCA)
GDC TCGA Head and Neck Cancer (HNSC)
GDC TCGA Kidney Chromophobe (KICH)
GDC TCGA Kidney Clear Cell Carcinoma (KIRC)
GDC TCGA Kidney Papillary Cell Carcinoma (KIRP)
GDC TCGA Large B-cell Lymphoma (DLBC)
GDC TCGA Lower Grade Glioma (LGG)
GDC TCGA Lung Adenocarcinoma (LUAD)
GDC TCGA Lung Squamous Cell Carcinoma (LUSC)
GDC TCGA Ocular melanomas (UVM)
GDC TCGA Pancreatic Cancer (PAAD)
GDC TCGA Pheochromocytoma & Paraganglioma (PCPG)
GDC TCGA Prostate Cancer (PRAD)
GDC TCGA Stomach Cancer (STAD)
GDC TCGA Testicular Cancer (TGCT)