hasit2 build index
2017-12-24 本文已影响0人
e8a37405cb53
#!/bin/bash
if [ $# !=3 ];then
echo $0 <gtf> <fasta> <refOut>"
if
extract_splice_sites.py $1 >splice_sites.txt
extract_exons.py $1 >exons.txt
hisat2-build --exon exons.txtt --ss splice_sites.txt $2 $3
