OHDSI - CDM标准医疗临床 - 科研数据模型何为行星级的医学AI系统?

PROCEDURE_OCCURRENCE表

2020-04-15  本文已影响0人  skysunky

PROCEDURE_OCCURRENCE表,包含为了诊断或治疗目的,由医疗保健服务贡献者开医嘱或直接执行医疗行为操作的记录。操作以不同形式存在于各种源数据中,具有不同的标准化水平。例如:

The PROCEDURE_OCCURRENCE table contains records of activities or processes ordered by, or carried out by, a healthcare provider on the patient to have a diagnostic or therapeutic purpose. Procedures are present in various data sources in different forms with varying levels of standardization. For example:

Field Required Type Description 描述
procedure_occurrence_id Yes integer A system-generated unique identifier for each Procedure Occurrence. 系统生成的每个操作的唯一标识符。
person_id Yes integer A foreign key identifier to the Person who is subjected to the Procedure. The demographic details of that Person are stored in the PERSON table. 外键,标识接受操作的居民。该居民的人口统计信息存储在PERSON表中。
procedure_concept_id Yes integer A foreign key that refers to a standard procedure Concept identifier in the Standardized Vocabularies. 外键,指向标准词汇表中的操作的标准概念。
procedure_date No date The date on which the Procedure was performed. 操作执行的日期。
procedure_datetime Yes datetime The date and time on which the Procedure was performed. 操作执行的日期和时间。
procedure_type_concept_id Yes integer A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the procedure record is derived, belonging to the 'Procedure Type' vocabulary. 外键,标准词汇表中预定义概念标识符,标识从中派生操作记录的源数据类型,属于“操作类型”词汇表。
modifier_concept_id Yes integer A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral). These concepts are typically distinguished by 'Modifier' concept classes (e.g., 'CPT4 Modifier' as part of the 'CPT4' vocabulary). 外键,标准概念标识符,用于操作的限定词(例如双侧)。这些概念通常通过“限定词”概念类来区分(例如,'CPT4限定词'作为'CPT4'词汇表的一部分)。
quantity No integer The quantity of procedures ordered or administered. 医嘱中或治疗方案中的操作数量。
provider_id No integer A foreign key to the provider in the PROVIDER table who was responsible for carrying out the procedure. 外键,标识PROVIDER表中记录的负责执行该操作的贡献者
visit_occurrence_id No integer A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Procedure was carried out. 外键,标识操作执行对应的VISIT_OCCURRENCE表中对应的就诊信息
visit_detail_id No integer A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Procedure was carried out. 外键,标识操作执行对应的VISIT_DETAIL表中对应的就诊详细信息
procedure_source_value No varchar(50) The source code for the Procedure as it appears in the source data. This code is mapped to a standard procedure Concept in the Standardized Vocabularies and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4, HCPCS or OPCS-4 codes. 出现在源数据中对应操作的源代码。此代码映射到标准化词汇表中的标准操作概念,原始代码存储在此处以供参考。操作的源代码通常是ICD-9-Proc,CPT-4,HCPCS或OPCS-4代码。
procedure_source_concept_id Yes integer A foreign key to a Procedure Concept that refers to the code used in the source. 外键,源数据中标识标识操作概念的代码。
modifier_source_value No varchar(50) The source code for the qualifier as it appears in the source data. 源数据中限定符的源代码

共识

No. Convention Description 共识
1 Valid Procedure Concepts belong to the 'Procedure' domain. Procedure Concepts are based on a variety of vocabularies: SNOMED-CT, ICD-9-Proc, CPT-4, HCPCS and OPCS-4, but also atypical Vocabularies such as ICD-9-CM or MedDRA. 对于操作,“Procedure”域是有效概念。操作概念基于各种术语集:SNOMED-CT,ICD-9-Proc,CPT-4,HCPCS和OPCS-4,以及非典型词汇表,如ICD-9-CM或MedDRA。
2 Procedures are expected to be carried out within one day and therefore have no end date. 预设每一种操作都在一天内进行,因此没有结束日期。
3 Procedures could involve the application of a drug, in which case the procedural component is recorded in the procedure table and simultaneously the administered drug in the drug exposure table when both the procedural component and drug are identifiable. 操作可能涉及药物的应用,在这种情况下,当操作和药物都可识别时,操作部分信息记录在PROCEDURE表中,同时,药物暴露的信息记录在DRUG_EXPOSURE表。
4 If the quantity value is omitted, a single procedure is assumed. 如果省略了数量值不记录,那么认定该操作为1次。
5 The Procedure Type defines from where the Procedure Occurrence is drawn or inferred. For administrative claims records the type indicates whether a Procedure was primary or secondary and their relative positioning within a claim. 操作类型,表示的是从何处抓取或推断的该操作数据。例如对于理赔记录,操作类型指的是主要理赔项目或次要理赔项目。
6 The Visit during which the procedure was performed is recorded through a reference to the VISIT_OCCURRENCE table. This information is not always available. 通过关联VISIT_OCCURRENCE表,可记录执行该次操作对应的就诊信息。此信息并非始终可用。
7 The Visit Detail during with the procedure was performed is recorded through a reference to the VISIT_DETAIL table. This information is not always available. 通过关联VISIT_DETAIL表,可记录执行该次操作对应的就诊详细信息。此信息并非始终可用。
8 The Provider carrying out the procedure is recorded through a reference to the PROVIDER table. This information is not always available. 通过关联PROVIDER表,可记录执行该次操作对应的贡献者信息(执行人,如主刀,执行护士,执行医师,报告技师等)。此信息并非始终可用。
9 [When dealing with duplicate records, the ETL must determine whether to sum them up into one record or keep them separate. Things to consider are:Same ProcedureSame PROCEDURE_DATETIMESame Visit Occurrence or Visit DetailSame ProviderSame Modifier for ProceduresSame COST_IDTHEMIS issue #27 ETL中,必须确定是将重复记录合并为一条记录还是将它们分开。需要考虑的事项是:相同的操作,相同的操作日期时间,相同的就诊事件或就诊详细信息,相同的操作贡献者,相同的操作限定词,相同的费用IDTHEMIS issue#27
10 If a Procedure has a quantity of '0' in the source, this should default to '1' in the ETL. If there is a record in the source it can be assumed the exposure occurred at least once (THEMIS issue #26). 如果数据源中的操作数量为“0”,则ETL处理时的值应为“1”。如果数据源中有任何操作相关的记录,则可以假定为该操作暴露至少发生过一次(THEMIS问题#26)

本系列在介绍目前世界上最适用于临床科研+卫生经济学的标准医疗大数据格式(未经严谨考证,但有相关研究发表在专业期刊上),俨然是真实世界研究方案里面最接进成熟的基础建设方案。感兴趣的介绍请移步B站观看视频。

OHDSI——观察性健康医疗数据科学与信息学,是一个世界性的公益型非盈利研究联盟,主要研究全方位医学大数据分析的开源解决方案,旨在通过大规模数据分析和挖掘来提升临床医学数据价值,实现跨学科、跨行业的多方合作。目前,目前,已有来自美国、加拿大、澳大利亚、英国等几十个国家地区的上百个组织机构,高校,医院和公司企业参与了OHDSI全球协作网络,如斯坦福、哈佛、杜克大学医学院,强生、诺华、甲骨文、IBM公司,拥有超过6亿人口的临床数据规模,累计协作研究发表了上百篇论文。

我们在这里邀请国内对相关工作感兴趣、愿共同学习的好学人士参与到中文兴趣小组,互通有无,一起弥补跨行业、跨学科的知识积累。前期主要以对OHDSI在github上的开源工作进行翻译、交流、学习为主,并会对医疗大数据、医学统计学、生物信息学等学科知识建立学习互助、互督的机制。有兴趣的请看文档,微信群二维码在内:OHDSI中文兴趣小组共识&OHDSI介绍

OHDSI秉持开源、开放的宗旨,加快全球医学数据研究的步伐,本文内容原创来自Github(https://github.com/OHDSI/CommonDataModel/wiki),若有利益冲突,请在本页面留言,真-侵删。

上一篇下一篇

猜你喜欢

热点阅读