基因的FPKM等于各转录本FPKM之和
基因和转录本定量hppRNA STAR-RSEM-Ebseq 流程的四个样本
gene FPKM:
gene_id |
KO1 |
KO2 |
Con1 |
Con2 |
DAG1 |
139.31 |
112.86 |
102.46 |
120.14 |
Transcription FPKM:
transcript_id |
gene_id |
KO1 |
KO2 |
Con1 |
Con2 |
NM_001177642 |
DAG1 |
2.37 |
2.1 |
0.95 |
0.88 |
NM_001177640 |
DAG1 |
1.51 |
1.62 |
1.09 |
0 |
NM_001177639 |
DAG1 |
79.93 |
70.07 |
67.33 |
99.38 |
NM_001177644 |
DAG1 |
0.51 |
0.21 |
0.82 |
0 |
NM_001177643 |
DAG1 |
17.18 |
13.62 |
12.34 |
8.26 |
NM_001177641 |
DAG1 |
0 |
0 |
0.13 |
0.53 |
NM_001177635 |
DAG1 |
2.71 |
0.22 |
2.26 |
0.49 |
NM_004393 |
DAG1 |
32.77 |
23.12 |
16.73 |
10.22 |
NM_001177634 |
DAG1 |
0.62 |
0.07 |
0 |
0.09 |
NM_001177638 |
DAG1 |
0.39 |
0.19 |
0 |
0 |
NM_001165928 |
DAG1 |
0 |
0.24 |
0 |
0 |
NM_001177637 |
DAG1 |
0 |
1.09 |
0 |
0.03 |
NM_001177636 |
DAG1 |
1.32 |
0.32 |
0.81 |
0.26 |
|
SUM |
139.31 |
112.87 |
102.46 |
120.14 |
FPKM(gene) = FPKM(transcript 1) + FPKM(transcript 2) + FPKM(transcript 3) + FPKM(transcript n)
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