研究细胞通讯的工具集锦
前面给打大家安利了一篇2021年新鲜出炉的综述：Nature Review|从基因表达解读细胞间的相互作用和交流。
今天给大家汇总一下这篇综述里面列举出的几个目前用的比较多的，也是学术界比较认可的研究细胞通讯的工具。
1.CellTalker
编程语言:R
软件网址:
https://github.com/arc85/celltalker
文章网址:
https://www.sciencedirect.com/science/article/pii/S1074761319304959
2.iTALK
编程语言:R
软件网址:
https://github.com/Coolgenome/iTALK
文章网址:
https://doi.org/10.1101/507871
3.CellChat
编程语言:R and Web interface
软件网址:
https://github.com/sqjin/CellChat
文章网址:
https://www.biorxiv.org/content/10.1101/2020.07.21.214387v1
4.CellPhoneDB
编程语言:Python and Web interface
软件网址:
https://github.com/Teichlab/cellphonedb
文章网址:
https://www.nature.com/articles/s41586-018-0698-6
5.Giotto
编程语言:R
软件网址:
https://github.com/RubD/Giotto
文章网址:
https://www.biorxiv.org/content/10.1101/701680v3
6.ICELLNET
编程语言:R
软件网址:
https://github.com/soumelis-lab/ICELLNET
文章网址:
https://www.biorxiv.org/content/10.1101/2020.03.05.976878v1
7.NicheNet
编程语言:R
软件网址:
https://github.com/saeyslab/nichenetr
文章网址:
https://www.nature.com/articles/s41592-019-0667-5
8.SoptSC
编程语言:MATLAB and R
软件网址:
https://github.com/WangShuxiong/SoptSC
文章网址:
https://academic.oup.com/nar/article/47/11/e66/5421812
9.scTensor
编程语言:R
软件网址:
https://github.com/rikenbit/scTensor
文章网址:
