PART1 m6A/MeRIP-seq
2022-07-01 本文已影响0人
小qqq
此次学习的m6A/MeRIP-seq 适合单个细胞样本或者bulk样本
work flow
image.png
需要用到的包：
Cutadapt, tested with 1.15
Samtools, tested with 1.7
HISAT2, tested with 2.1.0
Picard, tested with 2.17.10
bedtools, tested with 2.27.1
bedGraphToBigWig
StringTie, tested with 1.3.4d
prepDE.py
gffcompare, tested with 0.10.4
MACS2, tested with 2.1.1.20160309
HOMER, tested with 4.9
R, tested with 3.3.3. Install three libraries exomePeak, MeTPeak and MeTDiff in R.
参考文档：shunliubio/easym6A: Process m6A/MeRIP-seq data in a single or batch job mode (github.com)
