keytypes(org.Hs.eg.db)支持的id包含哪些?

2021-10-13  本文已影响0人  Seurat_Satija
 library(clusterProfiler)

clusterProfiler v3.18.0  For help: https://guangchuangyu.github.io/software/clusterProfiler

If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.

载入程辑包:‘clusterProfiler’

The following object is masked from ‘package:stats’:

    filter

> keytypes(org.Hs.eg.db)
Error in keytypes(org.Hs.eg.db) : could not find function "keytypes"
> library(org.Hs.eg.db)
载入需要的程辑包:AnnotationDbi
载入需要的程辑包:stats4
载入需要的程辑包:BiocGenerics
载入需要的程辑包:parallel

载入程辑包:‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted,
    lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

载入需要的程辑包:Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

载入需要的程辑包:IRanges
载入需要的程辑包:S4Vectors

载入程辑包:‘S4Vectors’

The following object is masked from ‘package:clusterProfiler’:

    rename

The following object is masked from ‘package:base’:

    expand.grid


载入程辑包:‘IRanges’

The following object is masked from ‘package:clusterProfiler’:

    slice

The following object is masked from ‘package:grDevices’:

    windows


载入程辑包:‘AnnotationDbi’

The following object is masked from ‘package:clusterProfiler’:

    select


> keytypes(org.Hs.eg.db)
 [1] "ACCNUM"       "ALIAS"        "ENSEMBL"      "ENSEMBLPROT"  "ENSEMBLTRANS" "ENTREZID"    
 [7] "ENZYME"       "EVIDENCE"     "EVIDENCEALL"  "GENENAME"     "GO"           "GOALL"       
[13] "IPI"          "MAP"          "OMIM"         "ONTOLOGY"     "ONTOLOGYALL"  "PATH"        
[19] "PFAM"         "PMID"         "PROSITE"      "REFSEQ"       "SYMBOL"       "UCSCKG"      
[25] "UNIGENE"      "UNIPROT" 
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