keytypes(org.Hs.eg.db)支持的id包含哪些?
2021-10-13 本文已影响0人
Seurat_Satija
library(clusterProfiler)
clusterProfiler v3.18.0 For help: https://guangchuangyu.github.io/software/clusterProfiler
If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
载入程辑包:‘clusterProfiler’
The following object is masked from ‘package:stats’:
filter
> keytypes(org.Hs.eg.db)
Error in keytypes(org.Hs.eg.db) : could not find function "keytypes"
> library(org.Hs.eg.db)
载入需要的程辑包:AnnotationDbi
载入需要的程辑包:stats4
载入需要的程辑包:BiocGenerics
载入需要的程辑包:parallel
载入程辑包:‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted,
lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
载入需要的程辑包:Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
载入需要的程辑包:IRanges
载入需要的程辑包:S4Vectors
载入程辑包:‘S4Vectors’
The following object is masked from ‘package:clusterProfiler’:
rename
The following object is masked from ‘package:base’:
expand.grid
载入程辑包:‘IRanges’
The following object is masked from ‘package:clusterProfiler’:
slice
The following object is masked from ‘package:grDevices’:
windows
载入程辑包:‘AnnotationDbi’
The following object is masked from ‘package:clusterProfiler’:
select
> keytypes(org.Hs.eg.db)
[1] "ACCNUM" "ALIAS" "ENSEMBL" "ENSEMBLPROT" "ENSEMBLTRANS" "ENTREZID"
[7] "ENZYME" "EVIDENCE" "EVIDENCEALL" "GENENAME" "GO" "GOALL"
[13] "IPI" "MAP" "OMIM" "ONTOLOGY" "ONTOLOGYALL" "PATH"
[19] "PFAM" "PMID" "PROSITE" "REFSEQ" "SYMBOL" "UCSCKG"
[25] "UNIGENE" "UNIPROT"