A version of this package for yo
2022-02-19 本文已影响0人
PhageNanoenzyme
> install.packages('BSgenome.Hsapiens.UCSC.hg19')
Installing package into ‘C:/Users/Nano/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘BSgenome.Hsapiens.UCSC.hg19’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
> BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31)
Installing package(s) 'BSgenome.Hsapiens.UCSC.hg19'
installing the source package ‘BSgenome.Hsapiens.UCSC.hg19’
trying URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz'
Content type 'application/x-gzip' length 710245413 bytes (677.3 MB)
downloaded 677.3 MB
* installing *source* package 'BSgenome.Hsapiens.UCSC.hg19' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BSgenome.Hsapiens.UCSC.hg19'
finding HTML links ... 好了
package html
Rd warning: C:/Users/Nano/AppData/Local/Temp/RtmpMv1i4e/R.INSTALL261056a3ec1/BSgenome.Hsapiens.UCSC.hg19/man/package.Rd:33: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/Nano/AppData/Local/Temp/RtmpMv1i4e/R.INSTALL261056a3ec1/BSgenome.Hsapiens.UCSC.hg19/man/package.Rd:36: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BSgenome.Hsapiens.UCSC.hg19)
The downloaded source packages are in
‘C:\Users\Nano\AppData\Local\Temp\RtmpyEvb7A\downloaded_packages’
Old packages: 'ade4', 'ape', 'argparse', 'arrow', 'backports', 'BayesFactor', 'bayestestR',
'bbmle', 'BH', 'blob', 'blogdown', 'bookdown', 'brew', 'brio', 'Brobdingnag', 'broom', 'bslib',
'cachem', 'Cairo', 'carData', 'caret', 'caTools', 'circlize', 'cli', 'clue', 'clusterProfiler',
'clustree', 'cmprsk', 'coin', 'colorspace', 'colourpicker', 'conquer', 'correlation',
'corrplot', 'cpp11', 'crayon', 'credentials', 'crosstalk', 'crul', 'curl', 'data.table', 'DBI',
'dbplyr', 'DelayedArray', 'deldir', 'dendextend', 'dendsort', 'DEoptimR', 'desc', 'DescTools',
'DESeq2', 'deSolve', 'devtools', 'diffobj', 'digest', 'doParallel', 'doSNOW', 'dplyr', 'dqrng',
'DT', 'dtplyr', 'edgeR', 'effectsize', 'ellipsis', 'EMT', 'enrichplot', 'ensembldb',
'evaluate', 'Exact', 'exactRankTests', 'ExperimentHub', 'expm', 'fansi', 'farver',
'fastcluster', 'fastICA', 'fastmap', 'fastmatch', 'findpython', 'fitdistrplus', 'flextable',
'forcats', 'foreach', 'foreign', 'formatR', 'fs', 'future', 'future.apply', 'gdtools',
'generics', 'GenomeInfoDb', 'GenomicFeatures', 'gert', 'GGally', 'ggdendro', 'ggforce',
'ggnewscale', 'ggplot2', 'ggplotify', 'ggraph', 'ggrastr', 'ggrepel', 'ggsignif',
'ggstatsplot', 'gh', 'gld', 'glmnet', 'glue', 'gmp', 'goftest', 'googlesheets4', 'gower',
'graphlayouts', 'GSVA', 'gtools', 'haven', 'hdf5r', 'HiddenMarkov', 'highr', 'Hmisc', 'hms',
'htmlTable', 'htmltools', 'htmlwidgets', 'httpuv', 'igraph', 'inline', 'insight', 'ipred',
'irlba', 'isoband', 'iterators', 'job', 'jpeg', 'jquerylib', 'jsonlite', 'KernSmooth', 'knitr',
'LaplacesDemon', 'later', 'lava', 'leiden', 'libcoin', 'lifecycle', 'lme4', 'lmtest',
'lubridate', 'maftools', 'magick', 'magrittr', 'maps', 'maptools', 'MASS', 'mathjaxr',
'Matrix', 'MatrixGenerics', 'MatrixModels', 'matrixStats', 'mc2d', 'MCMCpack', 'memoise',
'memuse', 'meta', 'metaBMA', 'metap', 'metaplus', 'mets', 'mgcv', 'mime', 'multcomp',
'mvtnorm', 'network', 'nlme', 'nloptr', 'nycflights13', 'officer', 'openssl', 'openxlsx',
'paletteer', 'parallelDist', 'parallelly', 'parameters', 'pbapply', 'pbkrtest', 'pdftools',
'pec', 'performance', 'permute', 'pillar', 'pixmap', 'pkgbuild', 'pkgload', 'plotly',
'plotrix', 'PMCMRplus', 'pracma', 'prismatic', 'pROC', 'proj4', 'promises', 'proxy', 'pryr',
'ps', 'quantreg', 'R.devices', 'R.utils', 'R6', 'ragg', 'ranger', 'rappdirs', 'rbibutils',
'rbokeh', 'rcmdcheck', 'Rcpp', 'RcppAnnoy', 'RcppArmadillo', 'RcppGSL', 'RcppParallel',
'RCurl', 'Rdpack', 'readr', 'recipes', 'remotes', 'reprex', 'reticulate', 'rex', 'Rfast',
'rhdf5filters', 'ridge', 'rio', 'riskRegression', 'rjags', 'rJava', 'rjson', 'rlang', 'rlist',
'rmarkdown', 'rmdformats', 'Rmpfr', 'Rmpi', 'rngtools', 'robustbase', 'rootSolve', 'roxygen2',
'rrcov', 'RSQLite', 'rstan', 'rstatix', 'rsvd', 'rtracklayer', 'Rttf2pt1', 'rvcheck',
'rversions', 'rvest', 'sandwich', 'sass', 'scattermore', 'scatterpie', 'scCATCH',
'sctransform', 'segmented', 'seqinr', 'servr', 'sessioninfo', 'Seurat', 'SeuratObject',
'shadowtext', 'shape', 'shiny', 'shinyjs', 'Signac', 'sitmo', 'slam', 'sn', 'snow', 'sp',
'SparseM', 'spatstat', 'spatstat.core', 'spatstat.data', 'spatstat.geom', 'spatstat.linnet',
'spatstat.sparse', 'spatstat.utils', 'statmod', 'statnet.common', 'statsExpressions',
'stringi', 'SuppDists', 'survival', 'survminer', 'svglite', 'systemfonts', 'testthat',
'textshaping', 'TH.data', 'tibble', 'tidyr', 'tidyselect', 'tidyverse', 'timereg', 'tinyarray',
'tinytex', 'tweenr', 'tzdb', 'usethis', 'utf8', 'uuid', 'uwot', 'V8', 'vcd', 'vctrs',
'VennDiagram', 'VGAM', 'viridis', 'viridisLite', 'vroom', 'waldo', 'WGCNA', 'withr', 'WRS2',
'xfun', 'XML', 'xml2', 'yaml', 'zip', 'boot', 'class', 'cluster', 'lattice', 'nnet', 'rpart',
'spatial'
Update all/some/none? [a/s/n]:
Update all/some/none? [a/s/n]:
n
>