R语言KEGG通路信息下不下来怎么办

2022-08-21  本文已影响0人  不会生信哟

杀杀
报错信息:
Error in download.KEGG.Path(species): 'species' should be one of organisms l

install.packages('R.utils')
R.utils::setOption("clusterProfiler.download.method",'auto')

再运行KEGG代码

path <- enrichKEGG(
  gene          = degene,
  #keyType     = "SYMBOL",
  organism   = 'hsa',
  pvalueCutoff      = 0.05,
  pAdjustMethod     = "BH",
  qvalueCutoff  = 1
)

引自:
https://www.biowolf.cn/Question/kegg_error.html

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