BUSCO多样本作图
2022-05-17 本文已影响0人
橙子_orange
BUSCO的原理及安装使用可参考：BUSCO - 组装质量评估 - 简书 (jianshu.com)
将每个fasta的busco评估结果移到同一目录下
mkdir summaries
mv short_summary.sc.1.txt ./summaries
mv short_summary.sc.2.txt ./summaries
mv short_summary.sc.3.txt ./summaries
mv short_summary.sc.4.txt ./summaries
运行作图程序，但报错提示没有匹配的文件，应该是文件名不符合要求
python scripts/generate_plot.py –wd my_summaries
2022-05-17 10:32:38 WARNING: No files matching the pattern short_summary.* were found in ./
查脚本发现对short_summary有名字格式要求：
Keep the file named as follow: short_summary.[generic|specific].dataset.label.txt, 'label' being used in the plot as species name
重命名，label部分将会显示在图例
mv short_summary.sc.1.txt short_summary.sc.dataset.Illumina.txt
mv short_summary.sc.2.txt short_summary.sc.dataset.Pacbio.txt
......
运行成功
生成的图像
