STAR比对后 GATK输出无结果

GATK使用方法详解（原始数据的处理） https://blog.csdn.net/whiffen_cann/article/details/56485268/
RNA-seq汇总（分析+工具+GATK流程） https://www.jianshu.com/p/cfc5c62c9756
天真的我准备把全部流程迁移到GATK4 https://cloud.tencent.com/developer/article/1373712
GATK--使用转载 https://www.cnblogs.com/nkwy2012/p/6322775.html

google出https://sites.google.com/a/broadinstitute.org/legacy-gatk-forum-discussions/2013-06-06-2013-02-12/2446-Problem-in-using-TargetRealigner-on-bowtie-mapped-reads