如何用Linux从NCBI批量下载数据
2021-03-24 本文已影响0人
这是李金辉呀
引用自
https://blog.csdn.net/sunwanying123/article/details/80885662
摘要：
esearch -db sra -query PRJNA355614 | efetch -format runinfo > runinfo.csv
cat runinfo.csv | cut -f 1 -d ',' | grep SRR > sraids.txt
cat sraids.txt | awk ' { print "prefetch " $1 " &"} ' > get-data.sh
bash get-data.sh
cat sraids.txt | awk ' { print "fastq-dump --split-3 -O sra " $1 } ' > split-data.sh
nohup bash split-data.sh &
