Linux服务器安装fastp，Hisat2, samtools
2024-10-16 本文已影响0人
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source ~/miniconda3/bin/activate
conda install fastp hisat2 htseq samtools
Channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: | warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATE
failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides python_abi 3.6.* *_cp36m needed by htseq-0.12.3-py36hb3f55d8_0
Could not solve for environment specs
The following packages are incompatible
├─ htseq is installable with the potential options
│ ├─ htseq [0.11.0|0.11.1|...|0.9.1] would require
│ │ └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
│ ├─ htseq [0.11.0|0.11.1|0.11.2|0.7.2|0.9.1] would require
│ │ └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
│ ├─ htseq [0.11.0|0.11.1|...|0.9.1] would require
│ │ └─ python [3.6* |>=3.6,<3.7.0a0 ], which can be installed;
│ ├─ htseq [0.11.2|0.11.3] would require
│ │ └─ python >=3.7,<3.8.0a0 , which can be installed;
│ ├─ htseq [0.12.3|0.12.4|0.13.5|0.7.2|0.9.1] would require
│ │ └─ python_abi 3.6.* *_cp36m, which does not exist (perhaps a missing channel);
│ ├─ htseq [0.12.3|0.12.4|...|2.0.1] would require
│ │ └─ python_abi 3.7.* *_cp37m, which does not exist (perhaps a missing channel);
│ ├─ htseq [0.12.4|0.13.5|...|2.0.1] would require
│ │ └─ python_abi 3.8.* *_cp38, which does not exist (perhaps a missing channel);
│ ├─ htseq [0.13.5|1.99.2|2.0.1] would require
│ │ └─ python_abi 3.9.* *_cp39, which does not exist (perhaps a missing channel);
│ ├─ htseq 0.6.1 would require
│ │ └─ matplotlib 1.2.1 , which does not exist (perhaps a missing channel);
│ ├─ htseq [0.6.1|0.6.1.post1|0.7.2|0.9.1] would require
│ │ └─ python_abi 2.7.* *_cp27mu, which does not exist (perhaps a missing channel);
│ ├─ htseq 0.7.2 would require
│ │ └─ python 3.4* , which does not exist (perhaps a missing channel);
│ └─ htseq [2.0.2|2.0.3|2.0.4|2.0.5] would require
│ └─ libgcc-ng >=12 , which does not exist (perhaps a missing channel);
└─ pin-1 is not installable because it requires
└─ python 3.9.* , which conflicts with any installable versions previously reported.
conda search htseq
Loading channels: done
# Name Version Build Channel
htseq 0.6.1p1 py27_0 anaconda/cloud/bioconda
htseq 0.6.1p1 py27_1 anaconda/cloud/bioconda
htseq 0.6.1 np17py27_0 anaconda/cloud/bioconda
htseq 0.6.1 py27_1 anaconda/cloud/bioconda
htseq 0.6.1 py27h470a237_2 anaconda/cloud/bioconda
htseq 0.6.1 py27h76bc9d7_4 anaconda/cloud/bioconda
htseq 0.6.1 py27hfd4ddd4_3 anaconda/cloud/bioconda
htseq 0.6.1.post1 py27h76bc9d7_5 anaconda/cloud/bioconda
htseq 0.6.1.post1 py27hfd4ddd4_4 anaconda/cloud/bioconda
htseq 0.7.2 py27_0 anaconda/cloud/bioconda
htseq 0.7.2 py27h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.7.2 py27h76bc9d7_4 anaconda/cloud/bioconda
htseq 0.7.2 py27h7eb728f_2 anaconda/cloud/bioconda
htseq 0.7.2 py27hfd4ddd4_3 anaconda/cloud/bioconda
htseq 0.7.2 py34_0 anaconda/cloud/bioconda
htseq 0.7.2 py35_0 anaconda/cloud/bioconda
htseq 0.7.2 py35h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.7.2 py35h7eb728f_2 anaconda/cloud/bioconda
htseq 0.7.2 py36_0 anaconda/cloud/bioconda
htseq 0.7.2 py36h0234e80_4 anaconda/cloud/bioconda
htseq 0.7.2 py36h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.7.2 py36h39af1c6_3 anaconda/cloud/bioconda
htseq 0.7.2 py36h7eb728f_2 anaconda/cloud/bioconda
htseq 0.7.2 py37h0498b6d_4 anaconda/cloud/bioconda
htseq 0.7.2 py37h70f9b12_3 anaconda/cloud/bioconda
htseq 0.7.2 py38h1773678_4 anaconda/cloud/bioconda
htseq 0.9.1 py27_0 anaconda/cloud/bioconda
htseq 0.9.1 py27h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.9.1 py27h76bc9d7_4 anaconda/cloud/bioconda
htseq 0.9.1 py27h7eb728f_2 anaconda/cloud/bioconda
htseq 0.9.1 py27hfd4ddd4_3 anaconda/cloud/bioconda
htseq 0.9.1 py35_0 anaconda/cloud/bioconda
htseq 0.9.1 py35h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.9.1 py35h7eb728f_2 anaconda/cloud/bioconda
htseq 0.9.1 py36_0 anaconda/cloud/bioconda
htseq 0.9.1 py36h0234e80_4 anaconda/cloud/bioconda
htseq 0.9.1 py36h24bf2e0_1 anaconda/cloud/bioconda
htseq 0.9.1 py36h39af1c6_3 anaconda/cloud/bioconda
htseq 0.9.1 py36h7eb728f_2 anaconda/cloud/bioconda
htseq 0.9.1 py37h0498b6d_4 anaconda/cloud/bioconda
htseq 0.9.1 py37h70f9b12_3 anaconda/cloud/bioconda
htseq 0.9.1 py38h1773678_4 anaconda/cloud/bioconda
htseq 0.11.0 py27h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.0 py27h7eb728f_1 anaconda/cloud/bioconda
htseq 0.11.0 py35h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.0 py35h7eb728f_1 anaconda/cloud/bioconda
htseq 0.11.0 py36h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.0 py36h7eb728f_1 anaconda/cloud/bioconda
htseq 0.11.1 py27h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.1 py35h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.1 py36h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.2 py27h637b7d7_1 anaconda/cloud/bioconda
htseq 0.11.2 py27h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.2 py35h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.2 py36h637b7d7_1 anaconda/cloud/bioconda
htseq 0.11.2 py36h7eb728f_0 anaconda/cloud/bioconda
htseq 0.11.2 py37h637b7d7_1 anaconda/cloud/bioconda
htseq 0.11.3 py27hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.11.3 py36hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.11.3 py37hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.12.3 py36hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.12.3 py37hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.12.4 py36h0234e80_2 anaconda/cloud/bioconda
htseq 0.12.4 py36h39af1c6_1 anaconda/cloud/bioconda
htseq 0.12.4 py36hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.12.4 py37h0498b6d_2 anaconda/cloud/bioconda
htseq 0.12.4 py37h70f9b12_1 anaconda/cloud/bioconda
htseq 0.12.4 py37hb3f55d8_0 anaconda/cloud/bioconda
htseq 0.12.4 py38h1773678_2 anaconda/cloud/bioconda
htseq 0.13.5 py36h0234e80_0 anaconda/cloud/bioconda
htseq 0.13.5 py36h7d1f7ee_1 anaconda/cloud/bioconda
htseq 0.13.5 py37h0498b6d_0 anaconda/cloud/bioconda
htseq 0.13.5 py37h9c5868f_1 anaconda/cloud/bioconda
htseq 0.13.5 py38h1773678_0 anaconda/cloud/bioconda
htseq 0.13.5 py38h803c66d_1 anaconda/cloud/bioconda
htseq 0.13.5 py39h70b41aa_1 anaconda/cloud/bioconda
htseq 1.99.2 py37h9c5868f_1 anaconda/cloud/bioconda
htseq 1.99.2 py37hfcd875c_2 anaconda/cloud/bioconda
htseq 1.99.2 py38h7a2e8c7_2 anaconda/cloud/bioconda
htseq 1.99.2 py38h803c66d_1 anaconda/cloud/bioconda
htseq 1.99.2 py38hacaa69e_0 anaconda/cloud/bioconda
htseq 1.99.2 py39h70b41aa_1 anaconda/cloud/bioconda
htseq 1.99.2 py39h919a90d_2 anaconda/cloud/bioconda
htseq 1.99.2 py39haf81c86_0 anaconda/cloud/bioconda
htseq 2.0.1 py37hfcd875c_0 anaconda/cloud/bioconda
htseq 2.0.1 py38h7a2e8c7_0 anaconda/cloud/bioconda
htseq 2.0.1 py39h919a90d_0 anaconda/cloud/bioconda
htseq 2.0.2 py310h5aa3a86_1 anaconda/cloud/bioconda
htseq 2.0.2 py310ha14a713_0 anaconda/cloud/bioconda
htseq 2.0.2 py37hfcd875c_0 anaconda/cloud/bioconda
htseq 2.0.2 py38h7a2e8c7_0 anaconda/cloud/bioconda
htseq 2.0.2 py38h8c35140_1 anaconda/cloud/bioconda
htseq 2.0.2 py39h919a90d_0 anaconda/cloud/bioconda
htseq 2.0.2 py39hd5189a5_1 anaconda/cloud/bioconda
htseq 2.0.3 py310h5aa3a86_1 anaconda/cloud/bioconda
htseq 2.0.3 py310ha14a713_0 anaconda/cloud/bioconda
htseq 2.0.3 py37hfcd875c_0 anaconda/cloud/bioconda
htseq 2.0.3 py38h7a2e8c7_0 anaconda/cloud/bioconda
htseq 2.0.3 py38h8c35140_1 anaconda/cloud/bioconda
htseq 2.0.3 py39h919a90d_0 anaconda/cloud/bioconda
htseq 2.0.3 py39hd5189a5_1 anaconda/cloud/bioconda
htseq 2.0.4 py310h5aa3a86_0 anaconda/cloud/bioconda
htseq 2.0.4 py38h8c35140_0 anaconda/cloud/bioconda
htseq 2.0.4 py39hd5189a5_0 anaconda/cloud/bioconda
htseq 2.0.5 py310h24e864b_2 anaconda/cloud/bioconda
htseq 2.0.5 py310h5aa3a86_0 anaconda/cloud/bioconda
htseq 2.0.5 py310h5aa3a86_1 anaconda/cloud/bioconda
htseq 2.0.5 py311h346d907_2 anaconda/cloud/bioconda
htseq 2.0.5 py312h8cd533b_2 anaconda/cloud/bioconda
htseq 2.0.5 py38h38ace90_2 anaconda/cloud/bioconda
htseq 2.0.5 py38h8c35140_0 anaconda/cloud/bioconda
htseq 2.0.5 py38h8c35140_1 anaconda/cloud/bioconda
htseq 2.0.5 py39h91a4a08_2 anaconda/cloud/bioconda
htseq 2.0.5 py39hd5189a5_0 anaconda/cloud/bioconda
htseq 2.0.5 py39hd5189a5_1 anaconda/cloud/bioconda
conda create -n pyht
conda activate pyht
conda install htseq fastp hisat2
cd /work/home/acwnw4bl7y/HT22/HT22
export PATH=/work/home/acwnw4bl7y/sratoolkit.3.1.1-centos_linux64/bin/:$PATH
source ~/miniconda3/bin/activate
conda activate pyht
