fsl批处理脚本

具体情况因人而异

#!/bin/bash

#touch processgo.sh

filelist=`ls /root/user/xiangyademo1/control_DTI_mriconvert/`

for dir in ${filelist};do

if [ -d ${dir} ];then

echo $dir

cd ${dir}

name=$(find *.nii)

#echo ${name%.*}

fslroi ${name%.*} b0 0 1

b0=$(find b0.nii.gz)

bet2 $b0 nodif_brain -m -f 0.2

eddy_correct ${name%.*} data 0

bvecs=$(find *_bvecs)

bvals=$(find *_bvals)

dtifit --data=data.nii.gz --out=data --mask=nodif_brain_mask.nii.gz --     bvecs=$bvecs --bvals=$bvals

cd ..

fi

done