hdf错误让你怀疑人生

总是有不少人贬低生信工程师的日常，我们也很痛苦，尤其是遇到解决起来非常麻烦的报错。

曾经一天之内就遇到两个hdf报错，而且报错信息还不一样，记得当初折磨的我饭都吃不下，额，说起来都是泪。

第一conifer软件的：

    self._g_new(filename, mode, **params)
  File "tables/hdf5extension.pyx", line 488, in tables.hdf5extension.File._g_new (tables/hdf5extension.c:5458)
tables.exceptions.HDF5ExtError: HDF5 error back trace

  File "H5F.c", line 604, in H5Fopen
    unable to open file
  File "H5Fint.c", line 1085, in H5F_open
    unable to read superblock
  File "H5Fsuper.c", line 277, in H5F_super_read
    file signature not found

End of HDF5 error back trace

Unable to open/create file 'analysis.hdf5'

第二个是GATK软件的,如下：

HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
  #000: /mnt/scr1/abyrne/HDFJava-platypus-2.11/native/HDF5-prefix/src/HDF5/src/H5F.c line 604 in H5Fopen(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #001: /mnt/scr1/abyrne/HDFJava-platypus-2.11/native/HDF5-prefix/src/HDF5/src/H5Fint.c line 1085 in H5F_open(): unable to read superblock
    major: File accessibilty
    minor: Read failed
  #002: /mnt/scr1/abyrne/HDFJava-platypus-2.11/native/HDF5-prefix/src/HDF5/src/H5Fsuper.c line 277 in H5F_super_read(): file signature not found
    major: File accessibilty
    minor: Not an HDF5 file

https://support.hdfgroup.org/products/java/hdfview/

后面我好像使用conda解决了，又好像没有解决，因为服务器比较多，有时候这个不行，我就赶快换一个。

source activate py36
conda list
conda install -y -c anaconda h5py
conda install -y -c anaconda hdf5

O(∩_∩)O哈哈~

管他了！