2020-10-11 for 循环
2020-10-10 本文已影响0人
dashan1928
for id in `ls /nfs_genome/home/zhaoshanzhong/zs/data/metagenome64/LBFC20200841/200805_A00262_0486_BH3CWMDSXY/*.R1.fastq.gz`
> do
> id=${id/*\//}
> id=${id/.R1.fastq.gz/}
> fastp -i /nfs_genome/home/zhaoshanzhong/zs/data/metagenome64/LBFC20200841/200805_A00262_0486_BH3CWMDSXY/$id.R1.fastq.gz -I /nfs_genome/home/zhaoshanzhong/zs/data/metagenome64/LBFC20200841/200805_A00262_0486_BH3CWMDSXY/$id.R2.fastq.gz -o $id.fq1.gz -O $id.fq2.gz
