SCENIC
安装相关:
在服务器上安装SCopeLoomR时,输入如下
devtools::install_github("aertslab/SCopeLoomR", build_vignettes =TRUE)
报错configure: error: The version of hdf5 installed on your system is not sufficient.
退出R后,module load hdf5。然后module show hdf5查看版本
SCENIC—Single Cell rEgulatory Network Inference and Clustering: https://www.jianshu.com/p/b0fd795ad05c
SCENIC | 从单细胞数据推断基因调控网络和细胞类型: http://blog.sciencenet.cn/home.php?mod=space&uid=118204&do=blog&id=1208136
SCENIC | 从单细胞数据推断基因调控网络和细胞类型: https://blog.csdn.net/qazplm12_3/article/details/103318716
SCENIC: 单细胞RNA-seq数据推断基因调控网络和细胞功能聚类: https://www.jianshu.com/p/cd967c449177
SENIC的使用: https://www.cnblogs.com/raisok/p/12425225.html
2019-08-28第七天:关于SCENIC的使用教程: https://www.jianshu.com/p/1390b6e58d85
使用SCENIC分析singlecell-RNAseq实战演练: https://www.jianshu.com/p/06675d601436
单细胞功能集GSVA以及转录调控SCENIC分析流程: https://www.hongguangblog.cn/archives/gsva-scenic
寻找细胞群体中的驱动基因: http://www.novelbio.com/blog/c2/26.html
cisTarget databases: https://resources.aertslab.org/cistarget/
干货分享!一文带你走进单细胞分析高级玩法:Regulon调控子分析: https://www.sohu.com/a/391493120_464200
Can we 'plotTsne' with our own tsne data: https://github.com/aertslab/SCENIC/issues/44
SCENIC: https://aertslab.org/#scenic