Error in unpackPkgZip(foundpkgs[
2021-11-11 本文已影响0人
Seurat_Satija
> BiocManager::install("sva")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31)
Installing package(s) 'sva'
trying URL 'https://bioconductor.org/packages/3.12/bioc/bin/windows/contrib/4.0/sva_3.38.0.zip'
Content type 'application/zip' length 604429 bytes (590 KB)
downloaded 590 KB
package ‘sva’ successfully unpacked and MD5 sums checked
Error in unpackPkgZip(foundpkgs[okp, 2L], foundpkgs[okp, 1L], lib, libs_only, :
ERROR: failed to lock directory ‘C:\Users\Nano\Documents\R\win-library\4.0’ for modifying
Try removing ‘C:\Users\Nano\Documents\R\win-library\4.0/00LOCK’
到C:\Users\Nano\Documents\R\win-library\4.0/00LOCK
删掉00LOCK这个文件即可
> BiocManager::install("sva")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.12 (BiocManager 1.30.16), R 4.0.5 (2021-03-31)
Installing package(s) 'sva'
trying URL 'https://bioconductor.org/packages/3.12/bioc/bin/windows/contrib/4.0/sva_3.38.0.zip'
Content type 'application/zip' length 604429 bytes (590 KB)
downloaded 590 KB
package ‘sva’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Nano\AppData\Local\Temp\RtmpWgl4vY\downloaded_packages
Old packages: 'ade4', 'argparse', 'arrow', 'backports', 'bayestestR', 'bbmle',
'blob', 'blogdown', 'bookdown', 'broom', 'bslib', 'cachem', 'car', 'caret',
'caTools', 'circlize', 'cli', 'clue', 'clusterProfiler', 'clustree', 'coin',
'colorspace', 'colourpicker', 'conquer', 'correlation', 'corrplot', 'cpp11',
'crayon', 'credentials', 'crosstalk', 'curl', 'data.table', 'DBI', 'dbplyr',
'DelayedArray', 'deldir', 'dendextend', 'dendsort', 'desc', 'DescTools',
'DESeq2', 'deSolve', 'diffobj', 'digest', 'dplyr', 'dqrng', 'DT', 'edgeR',
'effectsize', 'ellipsis', 'EMT', 'enrichplot', 'ensembldb', 'Exact',
'exactRankTests', 'ExperimentHub', 'expm', 'fansi', 'farver', 'fastcluster',
'fastICA', 'fastmap', 'fastmatch', 'findpython', 'fitdistrplus', 'flextable',
'forcats', 'formatR', 'future', 'future.apply', 'generics', 'GenomeInfoDb',
'GenomicFeatures', 'gert', 'GGally', 'ggforce', 'ggplot2', 'ggplotify', 'ggraph',
'ggrepel', 'ggsignif', 'ggstatsplot', 'gh', 'glmnet', 'glue', 'gmp', 'goftest',
'googlesheets4', 'GSVA', 'gtools', 'haven', 'hdf5r', 'HiddenMarkov', 'highr',
'Hmisc', 'hms', 'htmlTable', 'htmltools', 'htmlwidgets', 'httpuv', 'igraph',
'inline', 'insight', 'ipred', 'isoband', 'job', 'jpeg', 'jquerylib',
'KernSmooth', 'knitr', 'LaplacesDemon', 'later', 'lava', 'leiden', 'libcoin',
'lifecycle', 'lme4', 'lmtest', 'lubridate', 'maftools', 'magick', 'maps',
'maptools', 'MASS', 'mathjaxr', 'Matrix', 'MatrixGenerics', 'MatrixModels',
'matrixStats', 'mc2d', 'MCMCpack', 'memuse', 'metaBMA', 'metafor', 'metap',
'metaplus', 'mets', 'mgcv', 'mime', 'multcomp', 'mvtnorm', 'network', 'nlme',
'nloptr', 'nycflights13', 'officer', 'openssl', 'openxlsx', 'paletteer',
'parallelly', 'parameters', 'pbapply', 'pbkrtest', 'pec', 'performance',
'pillar', 'pixmap', 'pkgload', 'plotly', 'plotrix', 'PMCMRplus', 'prismatic',
'pROC', 'promises', 'proxy', 'pryr', 'ps', 'quantreg', 'R.devices', 'R.utils',
'R6', 'ragg', 'ranger', 'rappdirs', 'rbibutils', 'rbokeh', 'rcmdcheck',
'rcompanion', 'Rcpp', 'RcppAnnoy', 'RcppArmadillo', 'RcppGSL', 'RcppParallel',
'RCurl', 'Rdpack', 'readr', 'recipes', 'remotes', 'reprex', 'reticulate',
'rhdf5filters', 'rio', 'riskRegression', 'rjags', 'rJava', 'rlang', 'rlist',
'rmarkdown', 'rmdformats', 'Rmpfr', 'Rmpi', 'rms', 'rngtools', 'robustbase',
'rootSolve', 'roxygen2', 'RSQLite', 'rstatix', 'rsvd', 'rtracklayer', 'Rttf2pt1',
'rvcheck', 'rversions', 'rvest', 'sandwich', 'sass', 'scatterpie', 'segmented',
'seqinr', 'servr', 'sessioninfo', 'Seurat', 'SeuratObject', 'shadowtext',
'shape', 'shiny', 'Signac', 'sitmo', 'sn', 'snow', 'SparseM', 'spatstat',
'spatstat.core', 'spatstat.data', 'spatstat.geom', 'spatstat.linnet',
'spatstat.sparse', 'spatstat.utils', 'statmod', 'statnet.common',
'statsExpressions', 'stringi', 'survival', 'survminer', 'svglite', 'systemfonts',
'testthat', 'textshaping', 'TH.data', 'tibble', 'tidyr', 'tidyselect',
'tidyverse', 'timereg', 'tinyarray', 'tinytex', 'tweenr', 'tzdb', 'usethis',
'utf8', 'uuid', 'V8', 'vcd', 'vctrs', 'VennDiagram', 'viridis', 'viridisLite',
'vroom', 'waldo', 'WGCNA', 'WRS2', 'xfun', 'XML', 'zip', 'boot', 'class',
'cluster', 'lattice', 'nnet', 'spatial'
Update all/some/none? [a/s/n]:
n
